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Arabidopsis genes (annotated by AGI or CATMA)
represented on Affymetrix chip |
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| AffyID |
number oligos * |
AGI(s) ** |
cross-hybridization with *** |
AGI: putative gene function **** |
| 244938_at |
11 |
AtCg01120(11) |
|
AtCg01120: ribosomal protein S15 |
| 244954_s_at |
11 |
At2g07732(11); AtMg00280(11) |
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At2g07732: pseudogene, similar to ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit;
AtMg00280: hypothetical protein |
| 245128_at |
11 |
At2g45380(8) |
|
At2g45380: expressed protein |
| 245032_at |
11 |
At2g26630(11) |
At4g04635(2) |
At2g26630: transposase IS4 family protein |
| 266599_at |
11 |
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At2g46100(7) |
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| * number of different oligos (assigned as perfect match oligo by Affymetrix) representing one Affymetrix Identifier | | |
** all AGIs matched by at least 70% of all oligo sequences. In brackets it is stated how many oligos match this gene. E.g. for 245128_at 8 of 11 oligo match gene At2g45380 => At2g45380(8).
If more than one AGI is matched all these AGIs are shown.
For Affymetrix Identifier, e.g. 266599_at, which matchs no AGI gene with more than 70% of their oligos, this box is blank. | | |
| *** shows possible cross-hybridizations, i.e. if for 266599_at 2 of 11 oligos match also gene At4g04635 => At4g04635(2). | | |
| **** shows putative gene functions of all AGIs listed in column two. |
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| In general: Oligo BLAST hits were only counted as true hits, if oligo sequence (25 nucleotides) corresponds exactly with the target sequence. |
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